SMILES 2D Molecular Structure macro

The simplified molecular-input line-entry system (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings.

The SMILES macro renders strings in SMILES format into two-dimensional drawings of the molecules.

How to use

In the Confluence editor, type /smiles and select SMILES 2D Molecular Structure.

The macro properties panel will appear.

Add your SMILES Text and width and height:

Save the Confluence page and the 2D Molecular Structure will be rendered.

Examples of SMILES notation and the macro output

Some examples of the SMILES 2D Molecular Structure macro:

Phenol

SMILES text:

C1=CC=C(C=C1)O

Macro output:

Reaction SMILES • Example 1

SMILES text:

C=CCBr.[Na+].[I-]>CC(=O)C>C=CCI.[Na+].[Br-] __{'textBelowArrow': '90%'}__

Macro output:

Reaction SMILES • Example 2

SMILES text:

CC(=O)O.OCC>[H+].[Cl-].OCC>CC(=O)OCC

Macro output:

Aspirin

SMILES text:

Macro output:

Codeine

SMILES text:

Macro output:

Glucose

SMILES text:

Macro output:

Beta-carotene

SMILES text:

Macro output:

Melatonin

SMILES text:

Macro output: