Getting Started

Owned by David Simpson
Last updated: Nov 23, 2023
2 min read

Thank you for your interest in Chemistry Toolkit for Confluence.

The app consists of several macros that are primarily suited to chemists, but also useful to physicists, biologists and mathematicians.

From December 2023, the cloud version of this macro is a commercial paid app.

List of macros

SMILES 2D Molecular Structure macro

Displays 2D chemical structures from SMILES text

Example:

Aspirin 2D structure – SMILES macro

→ How to use the SMILES 2D Molecular Structure macro

InChi 2D Molecular Structure macro

Displays 2D chemical structures from InChI text

Example:

Aspirin 2D structure – InChi macro

→ How to use the InChI 2D Molecular Structure macro

3D Molecule macro

Displays 3D chemical structures from PDB or MOL files.

Example:

→ How to use the 3D Molecule macro

LaTeX macros

Display mathematical formulae and chemical equations from LaTeX and mhchem text.

→ How to use the LaTeX macros

LaTeX (Block)

For use as a block level macro

Examples:

LaTeX (Inline)

For use as an inline macro.

Confluence Cloud has some difficulties rendering inline macro consistently, so the inline macro can sometimes have unexpected results.

Table from CSV (with Rendering) macro

An advanced formatting macro for Confluence. It displays a table of data from CSV sources (attachments or remove files) and render:

  • 2D chemical structures from SMILES text

  • Mathematical & chemical equations from LaTeX notation.

→ How to use the Table from CSV (with Rendering) macro

Example:

Table from Source (with Rendering) macro

An advanced formatting macro for Confluence. It displays a table of data from Confluence sources (in table-adf format, such as a native Confluence table) and render:

  • 2D chemical structures from SMILES text

  • Mathematical & chemical equations from LaTeX notation.

→ How to use the Table from Source (with Rendering) macro

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